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oncoanalyser
Publicmodules
Publicwebsite
Publicops
Publicstrict-syntax-health
Publicmsproteomics
Publicscrnaseq
PublicSingle-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detectionspatialvi
PublicPipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.seqsubmit
Publictaxprofiler
PublicHighly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic dataseqinspector
PublicDedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc rep…genomicrelatedness
Publicconfigs
PublicConfig files used to define parameters specific to compute environments at different Institutionsscdownstream
PublicA single cell transcriptomics pipeline for QC, integration and making the data presentableepitopeprediction
Publicmetatdenovo
PublicAssembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.raredisease
PublicCall and score variants from WGS/WES of rare disease patients.cageseq
Publictest-datasets
Publiclongraredisease
Publicdiseasemodulediscovery
PublicA pipeline for network-based disease module identification.atacseq
Publictools
Publicrnavar
Publicsarek
PublicAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencingdeepmutscan
Publicnf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.chipseq
Publicpacvar
Publicmag
PublicAssembly and binning of metagenomesfuncscan
Public
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