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Pull requests: nf-core/mag

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Pull requests list

Add citations and clean TODOs
#1006 opened Mar 28, 2026 by dialvarezs Loading…
11 tasks
9
Release 5.4.2 size/l
#1005 opened Mar 28, 2026 by dialvarezs Loading…
11 tasks
1
Use qsv/cat for merging GUNC summaries
#1004 opened Mar 27, 2026 by dialvarezs Loading…
11 tasks
Add coverm/contig to nf-core/modules
#997 opened Mar 12, 2026 by vinisalazar Loading…
11 tasks done
22
test_longreadonly
#958 opened Dec 8, 2025 by brovolia Loading…
11 tasks
2
Snapshot for -profile test
#909 opened Nov 3, 2025 by brovolia Loading…
11 tasks
Snapshot for -profile test_single_end ready to review
#908 opened Oct 31, 2025 by dialvarezs Loading…
11 tasks
1
5
Migrate to official nf-core bowtie2 modules + use hostile for host removal
#857 opened Aug 28, 2025 by dialvarezs • Draft
11 tasks
Replace Bowtie2 custom modules with official nf-core ones
#754 opened Jan 24, 2025 by jfy133 • Draft
1 of 15 tasks
5
Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs
#688 opened Oct 10, 2024 by vagkaratzas • Draft
1 of 11 tasks
1
24
Added ability to auto-create samplesheet for nf-core/phageannotator enhancement New feature or request ready to review
#543 opened Nov 20, 2023 by CarsonJM • Draft
7 of 10 tasks
@CarsonJM
32
ProTip! Exclude everything labeled bug with -label:bug.