shinyngs feature/observation matrix validation module#2392
Merged
pinin4fjords merged 13 commits intonf-core:masterfrom Oct 31, 2022
Merged
shinyngs feature/observation matrix validation module#2392pinin4fjords merged 13 commits intonf-core:masterfrom
pinin4fjords merged 13 commits intonf-core:masterfrom
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@nf-core-bot fix linting |
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Thanks for review @SPPearce |
This was referenced Nov 1, 2022
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The wrapped script in shinyngs reuses a bunch of package code to ensure consistency with the various components of feature/ observation matrices (FOM, e.g. gene/ sample/ matrix) and a set of contrast definitions. I think it might be handy as an input checker for workflows such as differential abundance, but even if not it may be useful elsewhere.
PR checklist
Closes #2390
versions.ymlfile.labelPROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-awarePROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-awarePROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware