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Add RSEM + refactor tests#31

Merged
maxulysse merged 6 commits intonf-core:devfrom
maxulysse:rnaseq_give_me_a_sign
Nov 21, 2024
Merged

Add RSEM + refactor tests#31
maxulysse merged 6 commits intonf-core:devfrom
maxulysse:rnaseq_give_me_a_sign

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@maxulysse
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/references branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@maxulysse maxulysse changed the title Add Kallisto, Salmon, rsem Add RSEM + refactor tests Nov 21, 2024
@maxulysse maxulysse marked this pull request as ready for review November 21, 2024 19:38
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@edmundmiller edmundmiller left a comment

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Amazing

@maxulysse maxulysse merged commit acc1944 into nf-core:dev Nov 21, 2024
@maxulysse maxulysse deleted the rnaseq_give_me_a_sign branch November 21, 2024 20:05
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2 participants