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Outrider multiqc 2
External counts
fix countrna/init environment yml
MAE workflow
Important! Template update for nf-core/tools v3.3.2
Update to new runner size syntax
Important! Template update for nf-core/tools v3.5.1
Add/full tests
Reorder SE object and fix gene_seqnames assignment
Fix bam index rename
Update pipeline to strict syntax
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